![]() ![]() The filename is generally a pathname to a local file,Įither absolute or relative to the current working directory as Individual sequence(s) or sequence alignmentĮxamples available from PDB-Dev (see database fetch) ĬhimeraX model names and positions to restore (triangles only: vertices, vertex normals, faces texture colors) STORM (STochastic Optical Reconstruction Microscopy) (use format netcdfmap to disambiguate from (MRC map with signed 8-bit mode interpreted as unsigned)Īnd specifying a corresponding atomic model ![]() (could be time series and/or multichannel) Header information and filename.img with the map values īoth are required, but either can be specified in the open command Ĭourtesy of Ralf Schmidt and Michael Schatz, Image Science Software) (the format consists of two files, filename.hed with (grayscale or RGB image series in multiple files or a single multipage file, (multiple channels and/or time points specified in file header) If the EMAN HDF file reader fails, a generic HDF (suffixes not interchangeable gridname.bmp required for reading (plain text file with four whitespace-separated columns of numbers,Īn XYZ vector and a resolution or other value ← Volume Data and Related (associated tool:ģD lattice volume data, float, unsigned 16-bit, uncompressed onlyĭirectional FSC (Fourier shell correlation)ĭirectional resolution to show on a colored globe (also requires a trajectory coordinate file Gromacs full-precision coordinates (binary) Time as a PSF file, or from an already-open atomic model (also requires trajectory topology, either from being opened at the same ![]() (use format zdock to disambiguate from standard PDB) PDB-format asymmetric unit in the VIPERdbĬoordinate system capsid built automatically using MMTF (Macromolecular Transmission Format)įor analysis of docking results from UCSF DOCK v4-6, If >99,999 atoms, amber or h36 serial numbering must be used Ītomic coordinates and associated annotations The command open formats command lists the possible formats andĪtomic coordinates and associated annotations Open 3237 from emdb name "gamma-secretase complex" Open ~/Desktop/maps/myfile.mrc name refined3 Input files may contain data to be displayed or commands or code to be executed. ![]()
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